Siyang Liu OverviewIn this exercise we start from a realigned and recalibrated alignment file of individual NA12878 in BAM format and infer SNPs and INDELs from it.We have two set of bams including the full Hiseq2000 sequencing alignment data set for NA12878 (~45x, high-coverage.bam) and the downsampled one from the high-coverage.bam (~4.5x, low-co ...

Siyang Liu OverviewIn this exercise we start from a realigned and recalibrated alignment file of individual NA12878 in BAM format and infer SNPs and INDELs from it.We have two set of bams including the full Hiseq2000 sequencing alignment data set for NA12878 (~45x, high-coverage.bam) and the downsampled one from the high-coverage.bam (~4.5x, low-co ...